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pwspy.analysis
pwspy.dataTypes
pwspy.utility
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Index
A
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B
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C
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D
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E
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F
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G
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H
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I
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K
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L
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M
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N
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O
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P
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R
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S
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T
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U
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V
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W
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X
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Y
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Z
A
Acquisition (class in pwspy.dataTypes)
acquisition (pwspy.utility.acquisition.SequenceAcquisition attribute)
addLayer() (pwspy.utility.reflection.multilayerReflectanceEngine.NonPolarizedStack method)
(pwspy.utility.reflection.multilayerReflectanceEngine.Stack method)
applyAffineTransform() (pwspy.utility.micromanager.PositionList method)
asDict() (pwspy.analysis.dynamics.DynamicsAnalysisSettings method)
(pwspy.analysis.pws.PWSAnalysisSettings method)
autoCorrelationSlope (pwspy.analysis.pws.PWSAnalysisResults attribute)
autoCorrMinSub (pwspy.analysis.pws.PWSAnalysisSettings attribute)
autoCorrStopIndex (pwspy.analysis.pws.PWSAnalysisSettings attribute)
B
binning (pwspy.dataTypes.DynMetaData property)
(pwspy.dataTypes.FluorMetaData property)
(pwspy.dataTypes.PwsMetaData property)
C
cached_property (class in pwspy.utility.misc)
calculateReflectance() (pwspy.utility.reflection.multilayerReflectanceEngine.NonPolarizedStack method)
(pwspy.utility.reflection.multilayerReflectanceEngine.Stack method)
CameraCorrection (class in pwspy.dataTypes)
cameraCorrection (pwspy.analysis.pws.PWSAnalysisSettings attribute)
circularIntegration() (pwspy.utility.reflection.multilayerReflectanceEngine.Stack method)
close() (pwspy.utility.DConversion.S2DMatlabBridge method)
ContainerStep (class in pwspy.utility.acquisition)
copy() (pwspy.utility.micromanager.MultiStagePosition method)
copySharedDataToSharedMemory() (pwspy.analysis.dynamics.DynamicsAnalysis method)
(pwspy.analysis.pws.PWSAnalysis method)
correctCameraEffects() (pwspy.dataTypes.DynCube method)
(pwspy.dataTypes.ICRawBase method)
(pwspy.dataTypes.PwsCube method)
create() (pwspy.analysis.dynamics.DynamicsAnalysisResults class method)
(pwspy.analysis.pws.PWSAnalysisResults class method)
(pwspy.dataTypes.ExtraReflectionCube class method)
createRIDefinitionFromGladstoneDale() (pwspy.utility.DConversion.S2DMatlabBridge method)
createSystemConfiguration() (pwspy.utility.DConversion.S2DMatlabBridge method)
D
darkCounts (pwspy.dataTypes.CameraCorrection attribute)
data (pwspy.dataTypes.ExtraReflectanceCube attribute)
decodeHdf() (pwspy.dataTypes.DynCube class method)
(pwspy.dataTypes.ExtraReflectanceCube class method)
(pwspy.dataTypes.ExtraReflectionCube class method)
(pwspy.dataTypes.ICBase class method)
(pwspy.dataTypes.ICRawBase class method)
(pwspy.dataTypes.KCube class method)
(pwspy.dataTypes.PwsCube class method)
decodeHdfMetadata() (pwspy.dataTypes.DynMetaData static method)
(pwspy.dataTypes.FluorMetaData static method)
(pwspy.dataTypes.PwsMetaData static method)
defaultXYStage (pwspy.utility.micromanager.MultiStagePosition attribute)
defaultZStage (pwspy.utility.micromanager.MultiStagePosition attribute)
delete() (pwspy.dataTypes.RoiFile method)
deleteRoi() (pwspy.dataTypes.RoiFile static method)
diffusion (pwspy.analysis.dynamics.DynamicsAnalysisResults attribute)
directory2dirName() (pwspy.dataTypes.ERMetaData class method)
dirName2Directory() (pwspy.dataTypes.ERMetaData class method)
dynamics (pwspy.dataTypes.Acquisition attribute)
DynamicsAnalysis (class in pwspy.analysis.dynamics)
DynamicsAnalysisResults (class in pwspy.analysis.dynamics)
DynamicsAnalysisSettings (class in pwspy.analysis.dynamics)
DynamicsCompilerSettings (class in pwspy.analysis.compilation)
DynamicsRoiCompilationResults (class in pwspy.analysis.compilation)
DynamicsRoiCompiler (class in pwspy.analysis.compilation)
DynCube (class in pwspy.dataTypes)
DynCube.ProcessingStatus (class in pwspy.dataTypes)
DynMetaData (class in pwspy.dataTypes)
DynMetaData.FileFormats (class in pwspy.dataTypes)
E
edgeDetectRegisterTranslation() (in module pwspy.utility.machineVision)
editNotes() (pwspy.dataTypes.Acquisition method)
encode() (pwspy.utility.micromanager.Property method)
(pwspy.utility.micromanager.PropertyMap method)
encodeHdfMetadata() (pwspy.dataTypes.DynMetaData method)
(pwspy.dataTypes.FluorMetaData method)
(pwspy.dataTypes.PwsMetaData method)
ERMetaData (class in pwspy.dataTypes)
exposure (pwspy.dataTypes.DynMetaData property)
(pwspy.dataTypes.FluorMetaData property)
(pwspy.dataTypes.PwsMetaData property)
ExtraReflectanceCube (class in pwspy.dataTypes)
extraReflectanceId (pwspy.analysis.pws.PWSAnalysisSettings attribute)
ExtraReflectionCube (class in pwspy.dataTypes)
extraReflectionIdTag (pwspy.analysis.dynamics.DynamicsAnalysisResults attribute)
extraReflectionTag (pwspy.analysis.pws.PWSAnalysisResults attribute)
F
FieldDecorator() (pwspy.analysis.dynamics.DynamicsAnalysisResults static method)
(pwspy.analysis.pws.PWSAnalysisResults static method)
fields() (pwspy.analysis.dynamics.DynamicsAnalysisResults static method)
(pwspy.analysis.pws.PWSAnalysisResults static method)
fileName2Name() (pwspy.analysis.dynamics.DynamicsAnalysisResults static method)
(pwspy.analysis.pws.PWSAnalysisResults static method)
filterCutoff (pwspy.analysis.pws.PWSAnalysisSettings attribute)
filterDust() (pwspy.dataTypes.DynCube method)
(pwspy.dataTypes.ExtraReflectanceCube method)
(pwspy.dataTypes.ExtraReflectionCube method)
(pwspy.dataTypes.ICBase method)
(pwspy.dataTypes.ICRawBase method)
(pwspy.dataTypes.KCube method)
(pwspy.dataTypes.PwsCube method)
filterOrder (pwspy.analysis.pws.PWSAnalysisSettings attribute)
fluorescence (pwspy.dataTypes.Acquisition attribute)
FluorescenceImage (class in pwspy.dataTypes)
FluorMetaData (class in pwspy.dataTypes)
fromHDF() (pwspy.dataTypes.RoiFile class method)
fromHDF_legacy() (pwspy.dataTypes.RoiFile class method)
fromHDF_legacy_legacy() (pwspy.dataTypes.RoiFile class method)
fromHdfDataset() (pwspy.dataTypes.ERMetaData class method)
(pwspy.dataTypes.ExtraReflectanceCube class method)
(pwspy.dataTypes.KCube class method)
(pwspy.dataTypes.PwsCube class method)
fromHdfFile() (pwspy.dataTypes.ERMetaData class method)
(pwspy.dataTypes.ExtraReflectanceCube class method)
fromJson() (pwspy.analysis.dynamics.DynamicsAnalysisSettings class method)
(pwspy.analysis.pws.PWSAnalysisSettings class method)
fromJsonFile() (pwspy.dataTypes.CameraCorrection class method)
fromJsonString() (pwspy.analysis.dynamics.DynamicsAnalysisSettings class method)
(pwspy.analysis.pws.PWSAnalysisSettings class method)
fromMask() (pwspy.dataTypes.Roi class method)
fromMat() (pwspy.dataTypes.RoiFile class method)
fromMetadata() (pwspy.dataTypes.DynCube class method)
(pwspy.dataTypes.ExtraReflectanceCube class method)
(pwspy.dataTypes.FluorescenceImage class method)
(pwspy.dataTypes.PwsCube class method)
fromNano() (pwspy.dataTypes.PwsCube class method)
(pwspy.dataTypes.PwsMetaData class method)
fromNanoMatFile() (pwspy.utility.micromanager.PositionList class method)
fromOldPWS() (pwspy.dataTypes.DynCube class method)
(pwspy.dataTypes.DynMetaData class method)
(pwspy.dataTypes.PwsCube class method)
(pwspy.dataTypes.PwsMetaData class method)
fromOpd() (pwspy.dataTypes.KCube static method)
fromPropertyMap() (pwspy.utility.micromanager.PositionList static method)
fromPwsCube() (pwspy.dataTypes.KCube class method)
fromTiff() (pwspy.dataTypes.DynCube class method)
(pwspy.dataTypes.DynMetaData class method)
(pwspy.dataTypes.FluorescenceImage class method)
(pwspy.dataTypes.FluorMetaData class method)
(pwspy.dataTypes.PwsCube class method)
(pwspy.dataTypes.PwsMetaData class method)
fromVerts() (pwspy.dataTypes.Roi class method)
G
generateMaterialCombos() (in module pwspy.utility.reflection.extraReflectance)
generateRExtraCubes() (in module pwspy.utility.reflection.extraReflectance)
GenericCompilerSettings (class in pwspy.analysis.compilation)
GenericRoiCompilationResults (class in pwspy.analysis.compilation)
GenericRoiCompiler (class in pwspy.analysis.compilation)
getAffineTransform() (pwspy.utility.micromanager.PositionList method)
getAllCubeCombos() (in module pwspy.utility.reflection.extraReflectance)
getAnalyses() (pwspy.dataTypes.DynMetaData method)
(pwspy.dataTypes.PwsMetaData method)
getAnalysesAtPath() (pwspy.dataTypes.DynMetaData class method)
(pwspy.dataTypes.PwsMetaData class method)
getAnalysisResultsClass() (pwspy.dataTypes.DynMetaData static method)
(pwspy.dataTypes.PwsMetaData static method)
getAutocorrelation() (pwspy.dataTypes.DynCube method)
getAutoCorrelation() (pwspy.dataTypes.KCube method)
getCoordinate() (pwspy.utility.acquisition.ContainerStep method)
(pwspy.utility.acquisition.IterableSequencerStep method)
(pwspy.utility.acquisition.PositionsStep method)
(pwspy.utility.acquisition.SequencerStep method)
(pwspy.utility.acquisition.TimeStep method)
(pwspy.utility.acquisition.ZStackStep method)
getIterationName() (pwspy.utility.acquisition.IterableSequencerStep method)
(pwspy.utility.acquisition.PositionsStep method)
(pwspy.utility.acquisition.TimeStep method)
(pwspy.utility.acquisition.ZStackStep method)
getMeanSpectra() (pwspy.dataTypes.DynCube method)
(pwspy.dataTypes.ExtraReflectanceCube method)
(pwspy.dataTypes.ExtraReflectionCube method)
(pwspy.dataTypes.ICBase method)
(pwspy.dataTypes.ICRawBase method)
(pwspy.dataTypes.KCube method)
(pwspy.dataTypes.PwsCube method)
getMetadataClass() (pwspy.dataTypes.DynCube static method)
(pwspy.dataTypes.ICRawBase static method)
(pwspy.dataTypes.PwsCube static method)
getNotes() (pwspy.dataTypes.Acquisition method)
getOpd() (pwspy.dataTypes.KCube method)
getReflectance() (in module pwspy.utility.reflection.reflectanceHelper)
getRefractiveIndex() (in module pwspy.utility.reflection.reflectanceHelper)
(pwspy.utility.reflection.multilayerReflectanceEngine.Layer method)
getRMSFromOPD() (pwspy.dataTypes.KCube method)
getRoi() (pwspy.dataTypes.RoiFile method)
getRois() (pwspy.dataTypes.Acquisition method)
getStepIteration() (pwspy.utility.acquisition.SequencerCoordinate method)
getTheoreticalReflectances() (in module pwspy.utility.reflection.extraReflectance)
getThumbnail() (pwspy.dataTypes.Acquisition method)
(pwspy.dataTypes.DynMetaData method)
(pwspy.dataTypes.FluorMetaData method)
(pwspy.dataTypes.PwsMetaData method)
getTreePath() (pwspy.utility.acquisition.ContainerStep method)
(pwspy.utility.acquisition.IterableSequencerStep method)
(pwspy.utility.acquisition.PositionsStep method)
(pwspy.utility.acquisition.SequencerStep method)
(pwspy.utility.acquisition.TimeStep method)
(pwspy.utility.acquisition.ZStackStep method)
getValidRoisInPath() (pwspy.dataTypes.RoiFile static method)
getXYPosition() (pwspy.utility.micromanager.MultiStagePosition method)
getZPosition() (pwspy.utility.micromanager.MultiStagePosition method)
H
hasNotes() (pwspy.dataTypes.Acquisition method)
hook() (pwspy.utility.acquisition.ContainerStep static method)
(pwspy.utility.acquisition.IterableSequencerStep static method)
(pwspy.utility.acquisition.PositionsStep static method)
(pwspy.utility.acquisition.SequencerStep static method)
(pwspy.utility.acquisition.TimeStep static method)
(pwspy.utility.acquisition.ZStackStep static method)
(pwspy.utility.micromanager.Property static method)
(pwspy.utility.micromanager.PropertyMap static method)
I
ICBase (class in pwspy.dataTypes)
ICRawBase (class in pwspy.dataTypes)
ICRawBase.ProcessingStatus (class in pwspy.dataTypes)
idTag (pwspy.dataTypes.DynMetaData property)
(pwspy.dataTypes.ERMetaData property)
(pwspy.dataTypes.FluorMetaData property)
(pwspy.dataTypes.PwsMetaData attribute)
Image (class in pwspy.utility.micromanager)
imCubeIdTag (pwspy.analysis.dynamics.DynamicsAnalysisResults attribute)
(pwspy.analysis.pws.PWSAnalysisResults attribute)
index (pwspy.dataTypes.DynCube property)
(pwspy.dataTypes.ExtraReflectanceCube property)
(pwspy.dataTypes.ExtraReflectionCube property)
(pwspy.dataTypes.ICBase property)
(pwspy.dataTypes.ICRawBase property)
(pwspy.dataTypes.KCube property)
(pwspy.dataTypes.PwsCube property)
interfaceMatrix() (pwspy.utility.reflection.multilayerReflectanceEngine.NonPolarizedStack static method)
(pwspy.utility.reflection.multilayerReflectanceEngine.Stack static method)
isSubPathOf() (pwspy.utility.acquisition.SequencerCoordinate method)
isValidPath() (pwspy.dataTypes.FluorMetaData class method)
IterableSequencerStep (class in pwspy.utility.acquisition)
iterateChildren() (pwspy.utility.acquisition.ContainerStep method)
(pwspy.utility.acquisition.IterableSequencerStep method)
(pwspy.utility.acquisition.PositionsStep method)
(pwspy.utility.acquisition.SequencerStep method)
(pwspy.utility.acquisition.TimeStep method)
(pwspy.utility.acquisition.ZStackStep method)
K
KCube (class in pwspy.dataTypes)
L
label (pwspy.utility.micromanager.MultiStagePosition attribute)
Layer (class in pwspy.utility.reflection.multilayerReflectanceEngine)
ld (pwspy.analysis.pws.PWSAnalysisResults attribute)
linearityPolynomial (pwspy.dataTypes.CameraCorrection attribute)
load() (pwspy.analysis.dynamics.DynamicsAnalysisResults class method)
(pwspy.analysis.pws.PWSAnalysisResults class method)
loadAnalysis() (pwspy.dataTypes.DynMetaData method)
(pwspy.dataTypes.PwsMetaData method)
loadAndProcess() (in module pwspy.utility.fileIO)
loadAny() (pwspy.dataTypes.DynCube class method)
(pwspy.dataTypes.PwsCube class method)
(pwspy.dataTypes.PwsMetaData class method)
(pwspy.dataTypes.RoiFile class method)
loadDirectory() (in module pwspy.utility.acquisition)
loadRoi() (pwspy.dataTypes.Acquisition method)
M
Material (class in pwspy.utility.reflection)
meanReflectance (pwspy.analysis.dynamics.DynamicsAnalysisResults attribute)
(pwspy.analysis.pws.PWSAnalysisResults attribute)
metadata (pwspy.dataTypes.ExtraReflectanceCube attribute)
metadataToJson() (pwspy.dataTypes.PwsMetaData method)
mirrorX() (pwspy.utility.micromanager.PositionList method)
mirrorY() (pwspy.utility.micromanager.PositionList method)
module
pwspy
pwspy.analysis
pwspy.analysis.compilation
pwspy.analysis.dynamics
pwspy.analysis.pws
pwspy.analysis.warnings
pwspy.dataTypes
pwspy.utility
pwspy.utility.acquisition
pwspy.utility.DConversion
pwspy.utility.fileIO
pwspy.utility.fluorescence
pwspy.utility.machineVision
pwspy.utility.micromanager
pwspy.utility.misc
pwspy.utility.plotting
pwspy.utility.reflection
pwspy.utility.reflection.extraReflectance
pwspy.utility.reflection.multilayerReflectanceEngine
pwspy.utility.reflection.reflectanceHelper
moduleVersion (pwspy.analysis.dynamics.DynamicsAnalysisResults attribute)
(pwspy.analysis.pws.PWSAnalysisResults attribute)
MultiStagePosition (class in pwspy.utility.micromanager)
N
name2FileName() (pwspy.analysis.dynamics.DynamicsAnalysisResults static method)
(pwspy.analysis.pws.PWSAnalysisResults static method)
NonPolarizedStack (class in pwspy.utility.reflection.multilayerReflectanceEngine)
normalizeByExposure() (pwspy.dataTypes.DynCube method)
(pwspy.dataTypes.ICRawBase method)
(pwspy.dataTypes.PwsCube method)
normalizeByReference() (pwspy.dataTypes.DynCube method)
(pwspy.dataTypes.ICRawBase method)
(pwspy.dataTypes.PwsCube method)
numericalAperture (pwspy.analysis.pws.PWSAnalysisSettings attribute)
(pwspy.dataTypes.ERMetaData property)
O
opd (pwspy.analysis.pws.PWSAnalysisResults attribute)
ORBRegisterTransform() (in module pwspy.utility.machineVision)
P
performFullPreProcessing() (pwspy.dataTypes.DynCube method)
(pwspy.dataTypes.ICRawBase method)
(pwspy.dataTypes.PwsCube method)
pixelSizeUm (pwspy.dataTypes.DynMetaData property)
(pwspy.dataTypes.FluorMetaData property)
(pwspy.dataTypes.PwsMetaData property)
plot() (pwspy.utility.micromanager.PositionList method)
(pwspy.utility.reflection.multilayerReflectanceEngine.NonPolarizedStack method)
(pwspy.utility.reflection.multilayerReflectanceEngine.Stack method)
plotExtraReflection() (in module pwspy.utility.reflection.extraReflectance)
plotMean() (pwspy.dataTypes.DynCube method)
(pwspy.dataTypes.ExtraReflectanceCube method)
(pwspy.dataTypes.ExtraReflectionCube method)
(pwspy.dataTypes.ICBase method)
(pwspy.dataTypes.ICRawBase method)
(pwspy.dataTypes.KCube method)
(pwspy.dataTypes.PwsCube method)
Polarization (class in pwspy.utility.reflection.multilayerReflectanceEngine)
polynomialOrder (pwspy.analysis.pws.PWSAnalysisSettings attribute)
polynomialRms (pwspy.analysis.pws.PWSAnalysisResults attribute)
Position1d (class in pwspy.utility.micromanager)
Position2d (class in pwspy.utility.micromanager)
PositionList (class in pwspy.utility.micromanager)
positions (pwspy.utility.micromanager.PositionList attribute)
PositionsStep (class in pwspy.utility.acquisition)
printSubTree() (pwspy.utility.acquisition.ContainerStep method)
(pwspy.utility.acquisition.IterableSequencerStep method)
(pwspy.utility.acquisition.PositionsStep method)
(pwspy.utility.acquisition.SequencerStep method)
(pwspy.utility.acquisition.TimeStep method)
(pwspy.utility.acquisition.ZStackStep method)
processParallel() (in module pwspy.utility.fileIO)
profileDec() (in module pwspy.utility.misc)
propagationMatrix() (pwspy.utility.reflection.multilayerReflectanceEngine.NonPolarizedStack static method)
(pwspy.utility.reflection.multilayerReflectanceEngine.Stack static method)
properties (pwspy.utility.micromanager.PropertyMap attribute)
Property (class in pwspy.utility.micromanager)
PropertyMap (class in pwspy.utility.micromanager)
pType (pwspy.utility.micromanager.Property attribute)
pws (pwspy.dataTypes.Acquisition attribute)
PWSAnalysis (class in pwspy.analysis.pws)
PWSAnalysisResults (class in pwspy.analysis.pws)
PWSAnalysisSettings (class in pwspy.analysis.pws)
PWSCompilerSettings (class in pwspy.analysis.compilation)
PwsCube (class in pwspy.dataTypes)
PwsCube.ProcessingStatus (class in pwspy.dataTypes)
PwsMetaData (class in pwspy.dataTypes)
PwsMetaData.FileFormats (class in pwspy.dataTypes)
pwspy
module
pwspy.analysis
module
pwspy.analysis.compilation
module
pwspy.analysis.dynamics
module
pwspy.analysis.pws
module
pwspy.analysis.warnings
module
pwspy.dataTypes
module
pwspy.utility
module
pwspy.utility.acquisition
module
pwspy.utility.DConversion
module
pwspy.utility.fileIO
module
pwspy.utility.fluorescence
module
pwspy.utility.machineVision
module
pwspy.utility.micromanager
module
pwspy.utility.misc
module
pwspy.utility.plotting
module
pwspy.utility.reflection
module
pwspy.utility.reflection.extraReflectance
module
pwspy.utility.reflection.multilayerReflectanceEngine
module
pwspy.utility.reflection.reflectanceHelper
module
PWSRoiCompilationResults (class in pwspy.analysis.compilation)
PWSRoiCompiler (class in pwspy.analysis.compilation)
R
referenceIdTag (pwspy.analysis.dynamics.DynamicsAnalysisResults attribute)
(pwspy.analysis.pws.PWSAnalysisResults attribute)
referenceMaterial (pwspy.analysis.pws.PWSAnalysisSettings attribute)
reflectance (pwspy.analysis.dynamics.DynamicsAnalysisResults attribute)
(pwspy.analysis.pws.PWSAnalysisResults attribute)
relativeUnits (pwspy.analysis.pws.PWSAnalysisSettings attribute)
releaseMemory() (pwspy.analysis.pws.PWSAnalysisResults method)
removeAnalysis() (pwspy.dataTypes.DynMetaData method)
(pwspy.dataTypes.PwsMetaData method)
renameStage() (pwspy.utility.micromanager.PositionList method)
renameXYStage() (pwspy.utility.micromanager.MultiStagePosition method)
rms (pwspy.analysis.pws.PWSAnalysisResults attribute)
rms_t_squared (pwspy.analysis.dynamics.DynamicsAnalysisResults attribute)
Roi (class in pwspy.dataTypes)
roiColor() (in module pwspy.utility.plotting)
RoiFile (class in pwspy.dataTypes)
RoiFile.FileFormats (class in pwspy.dataTypes)
row() (pwspy.utility.acquisition.ContainerStep method)
(pwspy.utility.acquisition.IterableSequencerStep method)
(pwspy.utility.acquisition.PositionsStep method)
(pwspy.utility.acquisition.SequencerStep method)
(pwspy.utility.acquisition.TimeStep method)
(pwspy.utility.acquisition.ZStackStep method)
rSquared (pwspy.analysis.pws.PWSAnalysisResults attribute)
run() (pwspy.analysis.compilation.DynamicsRoiCompiler method)
(pwspy.analysis.compilation.PWSRoiCompiler method)
(pwspy.analysis.dynamics.DynamicsAnalysis method)
(pwspy.analysis.pws.PWSAnalysis method)
RuntimeSequenceSettings (class in pwspy.utility.acquisition)
S
S2DMatlabBridge (class in pwspy.utility.DConversion)
saveAnalysis() (pwspy.dataTypes.DynMetaData method)
(pwspy.dataTypes.PwsMetaData method)
saveRoi() (pwspy.dataTypes.Acquisition method)
selectLassoROI() (pwspy.dataTypes.DynCube method)
(pwspy.dataTypes.ExtraReflectanceCube method)
(pwspy.dataTypes.ExtraReflectionCube method)
(pwspy.dataTypes.ICBase method)
(pwspy.dataTypes.ICRawBase method)
(pwspy.dataTypes.KCube method)
(pwspy.dataTypes.PwsCube method)
selectRectangleROI() (pwspy.dataTypes.DynCube method)
(pwspy.dataTypes.ExtraReflectanceCube method)
(pwspy.dataTypes.ExtraReflectionCube method)
(pwspy.dataTypes.ICBase method)
(pwspy.dataTypes.ICRawBase method)
(pwspy.dataTypes.KCube method)
(pwspy.dataTypes.PwsCube method)
selIndex() (pwspy.dataTypes.DynCube method)
(pwspy.dataTypes.ExtraReflectanceCube method)
(pwspy.dataTypes.ExtraReflectionCube method)
(pwspy.dataTypes.ICBase method)
(pwspy.dataTypes.ICRawBase method)
(pwspy.dataTypes.KCube method)
(pwspy.dataTypes.PwsCube method)
SequenceAcquisition (class in pwspy.utility.acquisition)
SequencerCoordinate (class in pwspy.utility.acquisition)
sequencerCoordinate (pwspy.utility.acquisition.SequenceAcquisition attribute)
SequencerCoordinateRange (class in pwspy.utility.acquisition)
SequencerStep (class in pwspy.utility.acquisition)
setAcceptedIterations() (pwspy.utility.acquisition.SequencerCoordinateRange method)
settings (pwspy.analysis.dynamics.DynamicsAnalysisResults attribute)
(pwspy.analysis.pws.PWSAnalysisResults attribute)
SIFTRegisterTransform() (in module pwspy.utility.machineVision)
SigmaToD_AllInputs() (pwspy.utility.DConversion.S2DMatlabBridge method)
skipAdvanced (pwspy.analysis.pws.PWSAnalysisSettings attribute)
Stack (class in pwspy.utility.reflection.multilayerReflectanceEngine)
stagePositions (pwspy.utility.micromanager.MultiStagePosition attribute)
stepIterations() (pwspy.utility.acquisition.IterableSequencerStep method)
(pwspy.utility.acquisition.PositionsStep method)
(pwspy.utility.acquisition.TimeStep method)
(pwspy.utility.acquisition.ZStackStep method)
subtractExtraReflection() (pwspy.dataTypes.DynCube method)
(pwspy.dataTypes.ICRawBase method)
(pwspy.dataTypes.PwsCube method)
systemName (pwspy.dataTypes.DynMetaData property)
(pwspy.dataTypes.ERMetaData property)
(pwspy.dataTypes.FluorMetaData property)
(pwspy.dataTypes.PwsMetaData property)
T
time (pwspy.analysis.dynamics.DynamicsAnalysisResults attribute)
(pwspy.analysis.pws.PWSAnalysisResults attribute)
(pwspy.dataTypes.DynMetaData property)
(pwspy.dataTypes.FluorMetaData property)
(pwspy.dataTypes.PwsMetaData property)
times (pwspy.dataTypes.DynCube property)
(pwspy.dataTypes.DynMetaData property)
TimeStep (class in pwspy.utility.acquisition)
to8bit() (in module pwspy.utility.machineVision)
toDataClass() (pwspy.dataTypes.DynMetaData method)
(pwspy.dataTypes.FluorMetaData method)
(pwspy.dataTypes.PwsMetaData method)
toHDF() (pwspy.analysis.dynamics.DynamicsAnalysisResults method)
(pwspy.analysis.pws.PWSAnalysisResults method)
(pwspy.dataTypes.RoiFile class method)
toHdfDataset() (pwspy.dataTypes.DynCube method)
(pwspy.dataTypes.ERMetaData method)
(pwspy.dataTypes.ExtraReflectanceCube method)
(pwspy.dataTypes.ExtraReflectionCube method)
(pwspy.dataTypes.ICBase method)
(pwspy.dataTypes.ICRawBase method)
(pwspy.dataTypes.KCube method)
(pwspy.dataTypes.PwsCube method)
toHdfFile() (pwspy.dataTypes.ExtraReflectanceCube method)
toJson() (pwspy.analysis.dynamics.DynamicsAnalysisSettings method)
(pwspy.analysis.pws.PWSAnalysisSettings method)
toJsonFile() (pwspy.dataTypes.CameraCorrection method)
toJsonString() (pwspy.analysis.dynamics.DynamicsAnalysisSettings method)
(pwspy.analysis.pws.PWSAnalysisSettings method)
toNanoMatFile() (pwspy.utility.micromanager.PositionList method)
toOldPWS() (pwspy.dataTypes.PwsCube method)
toPropertyMap() (pwspy.utility.micromanager.PositionList method)
toTiff() (pwspy.dataTypes.FluorescenceImage method)
(pwspy.dataTypes.PwsCube method)
transform() (pwspy.dataTypes.Roi method)
U
update() (pwspy.dataTypes.RoiFile method)
updateFolderStructure() (in module pwspy.utility.fluorescence)
V
validPath() (pwspy.dataTypes.ERMetaData class method)
value (pwspy.utility.micromanager.Property attribute)
verts (pwspy.dataTypes.Roi property)
W
wavelength (pwspy.dataTypes.DynMetaData property)
wavelengths (pwspy.dataTypes.ExtraReflectanceCube property)
(pwspy.dataTypes.PwsCube property)
wavelengthStart (pwspy.analysis.pws.PWSAnalysisSettings attribute)
wavelengthStop (pwspy.analysis.pws.PWSAnalysisSettings attribute)
waveNumberCutoff (pwspy.analysis.pws.PWSAnalysisSettings attribute)
X
x (pwspy.utility.micromanager.Position2d attribute)
xyStage (pwspy.utility.micromanager.Position2d attribute)
Y
y (pwspy.utility.micromanager.Position2d attribute)
Z
z (pwspy.utility.micromanager.Position1d attribute)
ZStackStep (class in pwspy.utility.acquisition)
zStage (pwspy.utility.micromanager.Position1d attribute)
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