pwspy.examplesΒΆ

This is a collection of example usages of the pwspy module.

flatFieldVisualizer

A script that attempts to reveal information about the spectral uniformity accross the field of view of the microscope.

limitedOPDSigma

This script is based on a matlab script written by Lusik Cherkezyan for Nanocytomics.

plotITOThinFilmCalibration

Plots the spectra of the ITO thin film used for calibration.

pwsAnalysis

An adaptation of the PWS analysis script used in MATLAB.

ROItoMirror

This script Allows the user to select a region of an ImCube.

syntheticMirror

This script blurs an image cube in the xy direction.

findOPDSurface

A collection of examples which attempt to extract information about the height of the cell surface from PWS data.

roiUsageExample

Loop through all ROIs for all acquisitions in a directory and plot a histogram of the RMS values within the ROI.

opdExampleScript

Load the OPD from a previosly saved analysis result and plot it using a special multi-dimensional plotting widget.